@BuZz That did it, thanks. Now I can unlock the framerate to fullspeed (60). I'll have to double check with mupen, but this might be able to run goldeneye at better speeds. F-Zero and other games are still crashing but that might just be the emulator.
@ranma looks like the fps counter is gone with the latest build from source. Maybe they figured it out and it's not needed anymore. Just know that if you update from source there is a chance there are new bugs.