Hello All,
I'm dealing today with the same issue but my investigation shows so far that for me it is only related to PAL MD games
I opened a separate threat here with some more research : https://retropie.org.uk/forum/topic/34696/megadrive-50hz-games-with-genesis
The problem that I have if I use 1980 x 1020 @ 50Hz is that the monitor for whatever reason has black borders all around and I experience this on PI4B