@DolphinCube said in Retroarch wont save after saving in-game a couple of times:

Certain games I played still has this issue. Especially with my n64 games. I think a fix is that when the system creates a new srm (for gba games). I have to manually delete it after the first save then reset the permissions of the roms folder for retropie using the retropie setup script.

That's weird, there's nothing that changes permissions during gameplay, all emulators/ports are run as the pi user. Did you modify the launching command to run as another user ?

But the configuration file error is still an issue

Why do you need to save the config file ? As a workaround, you can save a game/core override with the settings that you wish to change.