To retain the bezel configuration and the ability to run with verbose logging I have moved the bezel configuration into a game .zip.cfg file.

input_overlay = "/opt/retropie/configs/all/retroarch/overlay/GameBezels/SNES/Super Mario World (USA).cfg" config_save_on_exit = "false"

I added an issue in the BezelProject github: https://github.com/thebezelproject/BezelProject/issues/58