Just follow rsn8887 advice, but keep in mind that if you changed Retroarch option save on exit the core will revert to rgui despite main configuration, you have to edit cfg file on system folder.
About the rgui default
I think the big thing is the compatibility, xmb is not so snappy with shader activated and 1080p on Pi3, it decrease to 30 fps immediately and is slightly laggy. Nothing to worry too much, but is noticeable.
Also the 4:3 format i suppose, xmb is not so good and even i prefer rgui since i like bezels, but the rsn887 point about additional info cannot be overlooked, is more complete for sure, seems xmb is the new gold standard of Retroarch dev.