Hi I will ask in the Raspberry Pi Forums.
I did try MBR and GPT and still the same.
It all works, I was just wondering how to remove those messages from the 1tb retropie.
Thanks for getting back to me.
I thought it would be good to share the response I got from Raspberry Pi Forums
Edit the boot config:
sudo -E rpi-eeprom-config --edit
Add this command:
Save and exit: (ctrl x then y)
So it must be all fine and by setting above command it does not display the boot message now.