Well go to retropie,then go to file manager,now go to retropie,roms,(the console where you added roms),and check if they are there...if you have the roms in archives,that means the console deleted the direct access,to go to roms again,go to a snes game plsy it and click select and x at the same time,this will open a menu,push b and select settings,video,video filter,then select /,home,retropie,roms and the console,then select the game,select browse archive and select game file.
I got the same problem,i made that,but now the problem is that my disk is write protected...and if i use a new usb,the archives aren't there...