Crashing when opening Emulator - Was working

[TurdlePwr]

I had a base RetroPie setup and working with a few test ROMs on my Ubuntu VM. I decided to add a share using this guide and then I dumped a bunch of ROMs onto my VM. All off a sudden now all ROMs do no work. When I open a ROM for any system the screen goes black to drop to the emulator then it goes straight back to EmulationStation.

I tried deleting all RetroPie directories, reinstalling, and re-updating patches. I still have the same issues with emulators crashing. Any ideas what could be the problem?

System:
Dell Optiplex 990
16GB RAM
AMD Radeon HD 6450
XBox 360 wired controller and PS3 wired controller

RetroPie is on Ubuntu VM hosted on Oracle VM Virtual Box

-- Part of Verbose Log from /dev/shm/runcommand.log --
RetroArch [ERROR] :: Failed to link program #0.
RetroArch [ERROR] :: GLSL stock programs failed to compile.
RetroArch [ERROR] :: [GL]: Failed to initialize shader, falling back to stock.
RetroArch [INFO] :: [Shader driver]: Using GLSL shader backend.
RetroArch [INFO] :: [GLSL]: Checking GLSL shader support ...
RetroArch [WARN] :: [GL]: Stock GLSL shaders will be used.
RetroArch [INFO] :: [GLSL]: Found GLSL vertex shader.
RetroArch [INFO] :: [GLSL]: Found GLSL fragment shader.
RetroArch [INFO] :: [GLSL]: Linking GLSL program.
RetroArch [INFO] :: Linker log: Vertex shader(s) failed to link, fragment shader(s) failed to link.
Vertex link error: INVALID_OPERATION.
ERROR: error(#97) No program main found
fragment link error: INVALID_OPERATION.
ERROR: error(#97) No program main found