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That's strange, on a straight RPI3 install (4.5.1) I installed the from binary and ran Tunics, it worked fine. If you can get the /dev/shm/runcommand.log and post its content to pastebin.com, maybe we can figure out why it's not working.
Freedoom 0.11 was released on 2017-02-16
More information here: https://freedoom.github.io/index.html
I have updated the wiki https://github.com/RetroPie/RetroPie-Setup/wiki/Doom#how-to-setup-freedoom
Not sure how it get updated to the new Docs @herb_fargus ;-) https://retropie.org.uk/docs/Doom/
