Hi Dank. I just figured it out.
I started Retroarch, went to settings --> input --> then looked at Input User 1 Binds and compared to Input User 2 Binds. Both had the same Controller (Mad Catz Chun Li Fight Stick) listed, so I pulled in a secondary controller and mapped it accordingly.
The problem is solved. Now I have one other question I'll have to ask in the a new topic after I search more.
Thanks!
Rev