Solved it by updated to latest version.
This can be closed.

sorry read a few articles and got it fix sorry for wasting time

Vice isn't a Retroarch emulator, it treats a keyboard as a real commodore keyboard. If you press f12, do you get the config menu? In there you can setup controls.

Also some c64 games seem to want joystick 2 instead of joystick 1 for control.

Hey i had the same problem and i fixed it by

Going into a n64 game Pressing select plus x on my keyboard Go to quick menu (might be something by a similar name not at home rn to check Go to controls? Configure ur controls

Yep, I'm a noob haha. Turning off the launch menu did the trick. :)

Hi Guys, one new from my issue

Now works Killer instinct (n64) after I update the emulator, but now its flicking Star Fox rom (n64) =/

There is other thing, I cannot Install Quake I, after instal from binary, its always returning to ports menu, i tried deinstall and install again, but its now showing anymore in Retropie Setup (just install from source) but after that, its not showing in ports menu. =/

@willreaper

I used this guide for the overclocking and this was the correct method and worked for me:

http://www.instructables.com/id/RetroPie-Overclocked-Raspberry-Pi-3-for-Video-Game/

Take a close look of that console image, where the lines are positioned in the boot config, that is the key thing that has to be correct.

After that, you need to try out different settings in the emulation, by opening the Quick Menu while game is running and changing the emulation options.

Or is there a possibility to host a Game on a Windows computer or Mac and others can join? So i could just record my windows/mac screen to record the gamplay...?
I tried to host a hgame with Project64 and the AQZ-Netplay Plugin but my retropi said: "implementations differs", when i tried to join the game with my retropie :/

I'm experiencing exactly the same problem.
I hope someone has a solution.

I got mine working as well, the trick, I think was to copy in the ini file (changing the name) and let the config file generate it's own information based on the ini file (device id etc). I did set the number to 0 (full manual) for the controller, but it doesn't seem to matter as it changes back automatically once you launch a mupen64* emulator.

The controller will only work in mupen64 emulators though, so I may still return the adapter for something better. N64 is SOOOO much better with a real N64 controller though.

Not sure why this failed for me the first time, I think by taking in the cfg file I corrupted something.

@NoOddJob as @polish-potato said. On any mayflash adapters i have used, player 1 and 2 are backward. If that
isnt it then re set up your controller. Write down what numbers all the buttons are. Now open up the

/opt/retropie/configs/all/retroarch/autoconfig/

folder. Now find the configs for your controllers. Verify if if the numbers match. If they do then run

sudo jstest /dev/input/js0

Now push the buttons and verify if the buttons match there. If they dont, then change your config file to match the jstest.

After a lot of investigation, I didn´t found a working key configuration, online.
Also I could not access /dev/input/ to use jstest... Whatever, testing, testing, testing made the deal:
Working xBox360 wired USB Controller:

[Microsoft X-Box 360 pad] plugged = True plugin = 2 mouse = False AnalogDeadzone = 4096,4096 AnalogPeak = 32768,32768 Mempak switch = Rumblepak switch = Start = button(9) DPad U = hat(0 Up) DPad D = hat(0 Down) DPad L = hat(0 Left) DPad R = hat(0 Right) Z Trig = button(6) C Button U = axis(3-) C Button D = axis(3+) C Button L = axis(2-) C Button R = axis(2+) R Trig = button(7) L Trig = button(8) A Button = button(0) B Button = button(1) X Axis = axis(0-,0+) Y Axis = axis(1-,1+)

And to complete it, the iNext USB N64 Controller:

[Generic USB Joystick ] plugged = True plugin = 2 mouse = False AnalogDeadzone = 4096,4096 AnalogPeak = 32768,32768 Mempak switch = Rumblepak switch = C Button D = button(2) C Button L = button(3) L Trig = button(4) Start = button(9) Y Axis = axis(1-,1+) DPad U = hat(0 Up) A Button = button(6) DPad D = hat(0 Down) X Axis = axis(0-,0+) R Trig = button(5) DPad R = hat(0 Right) B Button = button(8) DPad L = hat(0 Left) Z Trig = button(7) C Button U = button(0) C Button R = button(1)

Seems all fine now, except connecting 2 N64, 1 xBox360 USB and 1 xBox Wireless-Adapter. ES displays, that no Controller is connected. They probably suck to much energy or it is related to the NesPi-Case I´m using :(

But that is another Topic :)

I could just use a controller for that with a slideing screen I guess...